| Protein ZmLBD4 | |
|---|---|
|
ZmLBD4 is a protein in the LBD family.
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| Information | |
| TF Name: | ZmLBD4 |
| Species: | Maize |
| TF Family: | LBD |
| Gene Name(Synonym): | LBD4 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmLBD4
ZmLBD4 is a protein in the LBD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d028721 | DAPseq |  |
sequence | fimo | position |
| Zm00001d028721 | DAPseq |  |
sequence | fimo | position |
| Zm00001d028721 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d028721 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmLBD4 is the regulator
Interactions where ZmLBD4 is the target
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Zm00001d028721_T001 from maize genome v4
Amino Acid Sequence
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MDDYGNASAGTAAPQPQQYYCRSVSPPSRVSSSCSPPPPPPPPAVLQVVGNVPPPTVVLSPCAACKILRRRCADGCVLAP
YFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLARAQAD
LLNAQAKHANLLALFCVEMANRRGNQQHPSPLTTMMDGGGGGGFGAAAYYQQTTLYDSDLDSATTWPDHEAQLWT
MDDYGNASAGTAAPQPQQYYCRSVSPPSRVSSSCSPPPPPPPPAVLQVVGNVPPPTVVLSPCAACKILRRRCADGCVLAP
YFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLARAQAD
LLNAQAKHANLLALFCVEMANRRGNQQHPSPLTTMMDGGGGGGFGAAAYYQQTTLYDSDLDSATTWPDHEAQLWT
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
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ACCACCCCTGCTGATCTCGTACGTA...
ACCACCCCTGCTGATCTCGTACGTACAACTAGCTAGCAGGCTCTACTACTCCATAGCCAACACTAGCTGCAGCAGCACTGCTGCTCCGGCCTCCGGTCATGGACGACTACGGCAACGCGAGCGCGGGCACGGCGGCGCCGCAGCCGCAGCAATATTACTGCCGCTCCGTGTCGCCGCCGTCCAGGGTGTCGTCGTCGTGCTCGCCGCCACCGCCTCCTCCTCCTCCCGCTGTCCTGCAGGTGGTGGGCAACGTGCCGCCGCCGACCGTCGTCCTGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGCTGCGCCGACGGCTGCGTGCTGGCTCCCTACTTCCCGCCGACCGAGCCCGCCAAGTTCACCACGGCGCACCGCGTCTTCGGCGCCAGCAACATCATCAAGCTCCTCCAGGATCTGCCGGAGAGCTCGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGAGGCGCGGCTGCGGGACCCAGTGTACGGGTGCGCGGGGGCGGTGTGCCGGCTGCAGAAGCAGGCCAACGAGCTCAAGGTGCAGCTGGCGCGCGCGCAGGCCGACCTGCTCAACGCGCAGGCCAAGCACGCCAACCTGCTCGCCCTCTTCTGCGTCGAGATGGCCAATCGCCGCGGCAACCAGCAGCACCCGTCGCCGCTGACGACGATGATGGACGGCGGCGGCGGCGGCGGATTCGGCGCGGCGGCGTACTACCAGCAGACGACGTTGTACGACTCGGACCTGGACTCGGCGACGACGTGGCCGGATCACGAAGCCCAGCTCTGGACCTAGCTCATGCTTCTATCGATCTCGACTACTACAAGTACTTTTTGTTGCATAAACAAATACTAGCTAGTACGTAGCACATGCATGTGCGTTCTGCAACGGCAACGTTTGCATCTTGTCGGATGCTGCTGCAAGAACGCTGTGCAGCCGGCCGTAATTACGAAGTATACCCCCGTCAATATACGATTAGTTGCTCTTGATGAATGAA
GRMZM2G021095_T01 from maize genome v3
Amino Acid Sequence
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MDDYGNASAGTAAPQPQQYYCRSVSPPSRVSSSCSPPPPPPPPAVLQVVGNVPPPTVVLSPCAACKILRRRCADGCVLAP
YFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLARAQAD
LLNAQAKHANLLALFCVEMANRRGNQQHPSPLTTMMDGGGGGGFGAAAYYQQTTLYDSDLDSATTWPDHEAQLWT
Nucleotide Sequence
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ACCACCCCTGCTGATCTCGTACGTA...
ACCACCCCTGCTGATCTCGTACGTACAACTAGCTAGCAGGCTCTACTACTCCATAGCCAACACTAGCTGCAGCAGCACTGCTGCTCCGGCCTCCGGTCATGGACGACTACGGCAACGCGAGCGCGGGCACGGCGGCGCCGCAGCCGCAGCAATATTACTGCCGCTCCGTGTCGCCGCCGTCCAGGGTGTCGTCGTCGTGCTCGCCGCCACCGCCTCCTCCTCCTCCCGCTGTCCTGCAGGTGGTGGGCAACGTGCCGCCGCCGACCGTCGTCCTGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGCTGCGCCGACGGCTGCGTGCTGGCTCCCTACTTCCCGCCGACCGAGCCCGCCAAGTTCACCACGGCGCACCGCGTCTTCGGCGCCAGCAACATCATCAAGCTCCTCCAGGATCTGCCGGAGAGCTCGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGAGGCGCGGCTGCGGGACCCAGTGTACGGGTGCGCGGGGGCGGTGTGCCGGCTGCAGAAGCAGGCCAACGAGCTCAAGGTGCAGCTGGCGCGCGCGCAGGCCGACCTGCTCAACGCGCAGGCCAAGCACGCCAACCTGCTCGCCCTCTTCTGCGTCGAGATGGCCAATCGCCGCGGCAACCAGCAGCACCCGTCGCCGCTGACGACGATGATGGACGGCGGCGGCGGCGGCGGATTCGGCGCGGCGGCGTACTACCAGCAGACGACGTTGTACGACTCGGACCTGGACTCGGCGACGACGTGGCCGGATCACGAAGCCCAGCTCTGGACCTAGCTCATGCTTCTATCGATCTCGACTACTACAAGTACTTTTTGTTGCATAAACAAATACTAGCTAGTACGTAGCACATGCATGTGCGTTCTGCAACGGCAACGTTTGCATCTTGTCGGATGCTGCTGCAAGAACGCTGTGCAGCCGGCCGTAATTACGAAGTATACCCCCGTCAATATACGATTAGTTGCTCTTGATGAATGAA
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